Variant report

Variant	rs325853
Chromosome Location	chr5:41041784-41041785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs167815	0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs170529	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs325854	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs325856	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs325857	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[YRI][hapmap]
rs325858	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs325859	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs325860	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs325863	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325864	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325866	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325867	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325868	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325870	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325871	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs325872	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs325873	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs325875	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap]
rs325876	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs391243	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs618334	0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs644800	0.81[ASN][1000 genomes]
rs648563	0.84[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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