Variant report

Variant	rs325856
Chromosome Location	chr5:41043575-41043576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41037388..41039310-chr5:41042420..41044059,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10512764	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs167815	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs170529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs325853	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs325854	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[YRI][hapmap]
rs325857	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs325858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap]
rs325859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs325860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs325863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325868	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325871	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs325872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs325873	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs325875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs325876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3805715	0.89[CHB][hapmap]
rs387699	0.89[CHB][hapmap]
rs391243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs618334	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs648563	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs865093	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41043000-41044000	Enhancers	Fetal Intestine Large	intestine
2	chr5:41043200-41043800	Enhancers	Fetal Intestine Small	intestine
3	chr5:41043400-41043600	Enhancers	Liver	Liver

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