Variant report

Variant	rs325854
Chromosome Location	chr5:41042284-41042285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs170529	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[YRI][hapmap]
rs325853	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs325856	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[YRI][hapmap];0.94[ASN][1000 genomes]
rs325858	0.82[CHB][hapmap];0.82[MEX][hapmap]
rs325859	0.82[CHB][hapmap]
rs325860	0.82[CHB][hapmap]
rs325863	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs325864	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs325866	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs325867	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs325868	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs325870	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs325872	0.82[CHB][hapmap]
rs325873	0.84[ASN][1000 genomes]
rs325875	0.82[CHB][hapmap]
rs325876	0.87[CHB][hapmap]
rs391243	0.88[CHB][hapmap]
rs648563	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs325854	LHX2	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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