Variant report

Variant	rs4957544
Chromosome Location	chr5:107156330-107156331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11742545	0.84[CEU][hapmap];0.83[CHD][hapmap]
rs17160628	0.85[ASN][1000 genomes]
rs34110285	0.83[ASN][1000 genomes]
rs3909361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4099186	0.84[CHB][hapmap]
rs4099187	0.92[CHB][hapmap]
rs4099188	0.84[CHB][hapmap]
rs4099189	0.92[CHB][hapmap]
rs4100173	0.83[ASN][1000 genomes]
rs4957723	0.85[ASN][1000 genomes]
rs6596754	0.80[ASN][1000 genomes]
rs6889417	0.82[ASN][1000 genomes]
rs7702274	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107153600-107162000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:107154000-107157600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:107156000-107156600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:107156000-107156800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107156000-107157200	Enhancers	NHDF-Ad	bronchial
7	chr5:107156000-107157400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:107156200-107161800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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