Variant report

Variant	rs4957775
Chromosome Location	chr5:107979579-107979580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10069339	0.80[AMR][1000 genomes]
rs28369260	0.80[AMR][1000 genomes]
rs57292082	0.80[AMR][1000 genomes]
rs6594327	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7448463	0.80[AMR][1000 genomes]
rs9326742	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4957775	ZSCAN12	trans	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107977800-107979600	Enhancers	NHDF-Ad	bronchial
2	chr5:107978200-107979600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:107978200-107979800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107978200-107979800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:107978200-107980400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107978200-107980400	Weak transcription	Fetal Stomach	stomach
7	chr5:107978200-107980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107978200-107984600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:107979200-107979600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:107979200-107979600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:107979400-107981000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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