Variant report

Variant	rs9326742
Chromosome Location	chr5:107989959-107989960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10056370	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10057764	0.80[ASN][1000 genomes]
rs10069339	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1508783	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1573993	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17161424	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2221670	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28369260	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957775	0.80[AMR][1000 genomes]
rs57292082	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6594327	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890407	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6890589	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7448463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7704945	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107985400-107990600	Enhancers	HUVEC	blood vessel
2	chr5:107985600-107990200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:107988800-107993600	Enhancers	Hela-S3	cervix
4	chr5:107989000-107990400	Enhancers	NHEK	skin
5	chr5:107989400-107990200	Enhancers	NH-A	brain
6	chr5:107989400-107990400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:107989400-107990400	Enhancers	HMEC	breast
8	chr5:107989400-107990400	Enhancers	NHLF	lung
9	chr5:107989400-107990800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:107989400-107992600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:107989400-107992600	Enhancers	NHDF-Ad	bronchial
12	chr5:107989600-107990000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:107989600-107990400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:107989600-107990600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:107989600-107990600	Enhancers	Osteobl	bone
16	chr5:107989600-107992800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:107989800-107990000	Enhancers	Fetal Heart	heart
18	chr5:107989800-107990600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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