Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57660035..57661588-chr1:57663099..57665461,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10889032	0.96[ASN][1000 genomes]
rs11206995	0.83[EUR][1000 genomes]
rs11206996	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11206997	0.91[MEX][hapmap];0.83[EUR][1000 genomes]
rs12030855	0.95[MEX][hapmap]
rs12040107	0.83[EUR][1000 genomes]
rs12042042	0.83[EUR][1000 genomes]
rs155294	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs155296	0.99[ASN][1000 genomes]
rs155297	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17115341	0.91[MEX][hapmap];0.83[EUR][1000 genomes]
rs1847537	0.83[EUR][1000 genomes]
rs197655	0.82[CHB][hapmap]
rs197661	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs492445	0.90[ASN][1000 genomes]
rs592604	1.00[ASN][1000 genomes]
rs592652	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs608346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs608808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs688379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs688382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs688437	0.99[ASN][1000 genomes]
rs932508	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[ASN][1000 genomes]
rs932509	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57647000-57670600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57657400-57670200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57658000-57663800	Weak transcription	Fetal Brain Male	brain
4	chr1:57658400-57662000	Weak transcription	Fetal Brain Female	brain
5	chr1:57658400-57664200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:57660000-57662200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:57660400-57661600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:57660400-57662000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:57660400-57662200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:57660800-57661400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:57660800-57661400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:57660800-57661600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:57660800-57662000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: