Variant report

Variant	rs608346
Chromosome Location	chr1:57661234-57661235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10889032	0.96[ASN][1000 genomes]
rs11206996	0.97[ASN][1000 genomes]
rs155294	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs155296	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs155297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs197655	0.82[CHB][hapmap]
rs197661	0.98[ASN][1000 genomes]
rs492445	0.90[ASN][1000 genomes]
rs495875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs592604	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs608808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688379	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs688382	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs688437	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs932508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs932509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57647000-57670600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57657400-57670200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57658000-57663800	Weak transcription	Fetal Brain Male	brain
4	chr1:57658400-57662000	Weak transcription	Fetal Brain Female	brain
5	chr1:57658400-57664200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:57660000-57662200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:57660400-57661600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:57660400-57662000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:57660400-57662200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:57660800-57661400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:57660800-57661400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:57660800-57661600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:57660800-57662000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:57661000-57661400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:57661000-57661800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:57661200-57661800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:57661200-57662200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr1:57661200-57662200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links