Variant report

Variant	rs4959372
Chromosome Location	chr6:6158907-6158908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1050782	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2326706	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2326707	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2876011	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35528285	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778360	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799563	0.89[ASN][1000 genomes]
rs4142290	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4142293	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4960171	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4960172	0.82[ASN][1000 genomes]
rs6597194	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6916752	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7758488	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7772158	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031283	chr6:6084559-6160039	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6144000-6163600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:6145000-6179800	Weak transcription	HSMM	muscle
3	chr6:6146800-6160200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:6146800-6200400	Weak transcription	Placenta	Placenta
5	chr6:6154000-6159600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:6158800-6165400	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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