Variant report

Variant	rs4960172
Chromosome Location	chr6:6161662-6161663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:6157025..6159845-chr6:6160579..6162393,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1032045	0.91[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1050782	0.81[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1124220	0.94[JPT][hapmap];0.94[YRI][hapmap]
rs2326706	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2326707	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2876011	0.92[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35528285	0.82[AMR][1000 genomes]
rs3778360	0.81[ASW][hapmap];0.89[CEU][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3799563	0.81[CHD][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap]
rs4142290	0.92[CEU][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4142293	0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4959372	0.82[ASN][1000 genomes]
rs4960171	0.96[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6597194	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6916752	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918368	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6928884	0.85[CHD][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs7758488	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7772158	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9504695	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4960172	C6orf201	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6144000-6163600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:6145000-6179800	Weak transcription	HSMM	muscle
3	chr6:6146800-6200400	Weak transcription	Placenta	Placenta
4	chr6:6158800-6165400	Weak transcription	HSMMtube	muscle
5	chr6:6160200-6164200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:6160400-6168400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:6160800-6163000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:6161400-6162400	Enhancers	Fetal Brain Male	brain
9	chr6:6161600-6165000	Weak transcription	Spleen	Spleen
10	chr6:6161600-6166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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