Variant report

Variant	rs4960146
Chromosome Location	chr6:5938410-5938411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5931357..5934310-chr6:5936528..5940681,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13197916	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1885729	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3018	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34978519	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901581	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912637	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935416	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770525	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9378995	0.84[ASN][1000 genomes]
rs9405882	0.84[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5936200-5939000	Enhancers	Fetal Muscle Leg	muscle
2	chr6:5936400-5938800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:5936400-5940600	Weak transcription	Right Atrium	heart
4	chr6:5936800-5938600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:5937000-5938600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:5937200-5938600	Enhancers	HSMM	muscle
7	chr6:5937200-5940600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:5937200-5940600	Weak transcription	HMEC	breast
9	chr6:5937400-5938600	Enhancers	HSMMtube	muscle
10	chr6:5937400-5940600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:5937600-5940200	Weak transcription	Osteobl	bone
12	chr6:5937600-5940600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:5937800-5938600	Enhancers	Fetal Brain Male	brain
14	chr6:5937800-5938600	Enhancers	Fetal Brain Female	brain
15	chr6:5937800-5938800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:5937800-5939800	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:5938000-5938600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:5938000-5938600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:5938000-5939600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:5938000-5940600	Weak transcription	NHLF	lung
21	chr6:5938000-5940800	Weak transcription	NH-A	brain
22	chr6:5938200-5940600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:5938400-5939000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:5938400-5940600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:5938400-5940600	Weak transcription	NHDF-Ad	bronchial

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