Variant report

Variant	rs4961436
Chromosome Location	chr9:17368136-17368137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10114087	1.00[EUR][1000 genomes]
rs10511634	1.00[EUR][1000 genomes]
rs16935426	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16935618	0.83[EUR][1000 genomes]
rs16935659	0.89[AMR][1000 genomes]
rs1889087	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3808786	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808794	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3824393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4333707	1.00[EUR][1000 genomes]
rs4961438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4961440	1.00[EUR][1000 genomes]
rs4961441	1.00[EUR][1000 genomes]
rs4961536	1.00[EUR][1000 genomes]
rs4961546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4961558	1.00[EUR][1000 genomes]
rs4961560	1.00[EUR][1000 genomes]
rs4961561	1.00[EUR][1000 genomes]
rs4961562	1.00[EUR][1000 genomes]
rs4961563	1.00[EUR][1000 genomes]
rs4961564	1.00[AMR][1000 genomes]
rs57111704	1.00[EUR][1000 genomes]
rs57299809	0.83[EUR][1000 genomes]
rs57706034	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58945647	1.00[EUR][1000 genomes]
rs59816547	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60964536	0.83[EUR][1000 genomes]
rs61584793	1.00[EUR][1000 genomes]
rs7036123	1.00[EUR][1000 genomes]
rs73414434	1.00[EUR][1000 genomes]
rs753394	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9802526	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv466271	chr9:17329964-17438391	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv613696	chr9:17329964-17438391	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1015524	chr9:17350843-17419424	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17338800-17371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:17341400-17369600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:17344400-17368800	Weak transcription	A549	lung
4	chr9:17355600-17372200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:17362000-17369400	Weak transcription	Fetal Kidney	kidney
6	chr9:17362000-17372600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:17362000-17394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:17364000-17368600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:17364200-17368800	Weak transcription	Brain Substantia Nigra	brain
10	chr9:17364600-17369000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:17364600-17376800	Weak transcription	Hela-S3	cervix
12	chr9:17365000-17369400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:17365000-17370000	Strong transcription	Fetal Stomach	stomach
14	chr9:17365000-17373600	Weak transcription	HSMM	muscle
15	chr9:17365400-17368600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:17365600-17369200	Strong transcription	Left Ventricle	heart
17	chr9:17365600-17370000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:17365600-17370200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:17366000-17368400	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:17366000-17369000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:17366200-17369000	Weak transcription	NHLF	lung
22	chr9:17366800-17368400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:17366800-17368600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
24	chr9:17366800-17370000	Strong transcription	Ovary	ovary
25	chr9:17367000-17368200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:17367000-17368400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr9:17367000-17368400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:17367000-17368400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:17367000-17368600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:17367000-17368600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:17367000-17368600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:17367000-17368600	Strong transcription	Adipose Nuclei	Adipose
33	chr9:17367000-17368600	ZNF genes & repeats	Aorta	Aorta
34	chr9:17367000-17368600	Strong transcription	Right Ventricle	heart
35	chr9:17367000-17368600	Strong transcription	Dnd41	blood
36	chr9:17367000-17368800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:17367000-17368800	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:17367000-17368800	ZNF genes & repeats	Lung	lung
39	chr9:17367000-17369000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:17367000-17369000	Strong transcription	Fetal Lung	lung
41	chr9:17367000-17369000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr9:17367000-17369000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
43	chr9:17367000-17369400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr9:17367000-17369800	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr9:17367000-17370600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:17367000-17371400	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:17367200-17368200	Strong transcription	Gastric	stomach
48	chr9:17367200-17368400	Weak transcription	NH-A	brain
49	chr9:17367200-17368600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:17367200-17369200	Strong transcription	Fetal Muscle Leg	muscle

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