Variant report

Variant	rs59816547
Chromosome Location	chr9:17279496-17279497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10114087	1.00[EUR][1000 genomes]
rs10511634	1.00[EUR][1000 genomes]
rs16935426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16935618	0.83[EUR][1000 genomes]
rs1889087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808783	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3808786	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824393	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4333707	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4961436	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4961438	1.00[EUR][1000 genomes]
rs4961440	1.00[EUR][1000 genomes]
rs4961441	1.00[EUR][1000 genomes]
rs4961536	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4961546	1.00[EUR][1000 genomes]
rs4961558	1.00[EUR][1000 genomes]
rs4961560	1.00[EUR][1000 genomes]
rs4961561	1.00[EUR][1000 genomes]
rs4961562	1.00[EUR][1000 genomes]
rs4961563	1.00[EUR][1000 genomes]
rs57111704	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57299809	0.83[EUR][1000 genomes]
rs57706034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58945647	1.00[EUR][1000 genomes]
rs60964536	0.83[EUR][1000 genomes]
rs61584793	1.00[EUR][1000 genomes]
rs7036123	1.00[EUR][1000 genomes]
rs9802526	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1031269	chr9:17204320-17316969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv892663	chr9:17243746-17329964	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv892664	chr9:17250170-17296630	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv892666	chr9:17256043-17280616	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv892667	chr9:17269437-17296630	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv613695	chr9:17273731-17348412	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17262600-17280400	Weak transcription	Liver	Liver
2	chr9:17262800-17339800	Weak transcription	Left Ventricle	heart
3	chr9:17268600-17280000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:17270000-17280600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:17272800-17279800	Weak transcription	Fetal Lung	lung
6	chr9:17272800-17280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:17272800-17280800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:17272800-17293000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:17273200-17301800	Weak transcription	Dnd41	blood
10	chr9:17274800-17323200	Weak transcription	Aorta	Aorta
11	chr9:17275400-17281400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:17276000-17283400	Weak transcription	A549	lung
13	chr9:17276400-17280400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:17276400-17281200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:17276800-17284000	Weak transcription	Fetal Stomach	stomach
16	chr9:17277000-17293000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:17277400-17284000	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:17278400-17281200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:17278400-17293600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:17278800-17284200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:17279200-17281200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr9:17279200-17281400	Weak transcription	Adipose Nuclei	Adipose
23	chr9:17279400-17280000	Enhancers	Ovary	ovary
24	chr9:17279400-17281000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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