Variant report

Variant	rs4964345
Chromosome Location	chr12:105652753-105652754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10778371	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4964127	0.88[ASN][1000 genomes]
rs4964344	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4964350	0.86[ASN][1000 genomes]
rs6419391	0.84[ASN][1000 genomes]
rs6539197	0.99[ASN][1000 genomes]
rs6539201	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7300300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358662	0.91[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7959327	0.86[ASN][1000 genomes]
rs7969800	0.89[ASN][1000 genomes]
rs7970588	0.81[ASN][1000 genomes]
rs7970719	0.91[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs7974354	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7974694	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7978648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105647000-105653400	Enhancers	NHLF	lung
2	chr12:105647400-105653400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr12:105648200-105653000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:105648200-105653800	Enhancers	NHDF-Ad	bronchial
5	chr12:105648200-105657400	Weak transcription	Esophagus	oesophagus
6	chr12:105648800-105652800	Enhancers	HSMM	muscle
7	chr12:105651200-105652800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:105651400-105653800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:105651800-105653000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr12:105651800-105653200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:105651800-105653400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:105651800-105653800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:105652000-105652800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:105652600-105657800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:105652600-105661400	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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