Variant report

Variant	rs4964350
Chromosome Location	chr12:105662548-105662549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4964130	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4964344	0.86[ASN][1000 genomes]
rs4964345	0.86[ASN][1000 genomes]
rs4964348	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6419391	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539197	0.84[ASN][1000 genomes]
rs66925241	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7134360	0.84[EUR][1000 genomes]
rs71441894	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7300300	0.86[ASN][1000 genomes]
rs7358662	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7959327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970588	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7970719	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7974694	0.81[ASN][1000 genomes]
rs7978648	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105662200-105662800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:105662200-105663000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:105662200-105663800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:105662200-105663800	Weak transcription	HSMM	muscle
7	chr12:105662400-105662800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:105662400-105662800	Weak transcription	NHDF-Ad	bronchial
9	chr12:105662400-105663400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:105662400-105663400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:105662400-105663800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr12:105662400-105664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links