Variant report

Variant	rs71441894
Chromosome Location	chr12:105665160-105665161
allele	AAA/CAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10778374	0.92[ASN][1000 genomes]
rs10778375	0.88[ASN][1000 genomes]
rs11112436	0.84[ASN][1000 genomes]
rs4964130	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4964348	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4964350	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6419391	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66925241	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7134360	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7358662	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7959327	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7970588	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7970719	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105662800-105665600	Enhancers	NHDF-Ad	bronchial
4	chr12:105663200-105665400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:105663400-105665800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:105663800-105665200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr12:105664000-105666200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:105664200-105665200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:105664400-105665800	Weak transcription	NHEK	skin
10	chr12:105664600-105672200	Weak transcription	HSMM	muscle
11	chr12:105664800-105665200	Enhancers	Fetal Heart	heart
12	chr12:105665000-105666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:105665000-105674200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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