Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10778374	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10778375	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1109432	0.86[ASN][1000 genomes]
rs1196768	0.85[ASN][1000 genomes]
rs1196776	0.86[ASN][1000 genomes]
rs1196778	0.86[ASN][1000 genomes]
rs1196779	0.86[ASN][1000 genomes]
rs1196781	0.86[ASN][1000 genomes]
rs1196785	0.86[ASN][1000 genomes]
rs1196788	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2374448	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2440708	0.84[ASN][1000 genomes]
rs4964127	0.82[EUR][1000 genomes]
rs4964130	0.81[ASN][1000 genomes]
rs4964346	0.83[EUR][1000 genomes]
rs4964348	0.85[ASN][1000 genomes]
rs6539196	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6539197	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66925241	0.83[ASN][1000 genomes]
rs71441894	0.84[ASN][1000 genomes]
rs727888	0.86[ASN][1000 genomes]
rs7309320	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7310488	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7969800	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11112436	ALDH1L2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105652600-105661400	Weak transcription	HSMMtube	muscle
2	chr12:105653400-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:105653400-105661400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:105656600-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:105657200-105661800	Weak transcription	NHDF-Ad	bronchial
6	chr12:105659600-105672200	Weak transcription	Aorta	Aorta

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