Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10778374	0.87[ASN][1000 genomes]
rs10778375	0.84[ASN][1000 genomes]
rs11112436	0.81[ASN][1000 genomes]
rs1196768	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1196781	0.85[CHB][hapmap]
rs1196788	0.85[CHB][hapmap]
rs1196796	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1196812	0.86[JPT][hapmap]
rs1196814	0.84[JPT][hapmap]
rs1196816	0.86[JPT][hapmap]
rs1196836	0.89[JPT][hapmap]
rs1196838	0.85[JPT][hapmap]
rs1196840	0.85[JPT][hapmap]
rs1196865	0.84[JPT][hapmap]
rs1201657	0.84[JPT][hapmap]
rs1201658	0.84[JPT][hapmap]
rs1732378	0.85[JPT][hapmap]
rs1732384	0.84[JPT][hapmap]
rs2264066	0.85[JPT][hapmap]
rs2374448	0.84[CHB][hapmap]
rs2440713	0.84[JPT][hapmap]
rs2440717	0.84[JPT][hapmap]
rs2440719	0.85[JPT][hapmap]
rs4964348	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4964350	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6419391	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66925241	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7134360	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71441894	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs727888	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7310488	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7358662	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7959327	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7970588	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7970719	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9143	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105675800-105681200	Weak transcription	Stomach Mucosa	stomach
2	chr12:105676200-105681400	Weak transcription	HepG2	liver
3	chr12:105676400-105681400	Weak transcription	A549	lung

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