Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10778371	0.82[CHB][hapmap]
rs10778375	0.81[ASN][1000 genomes]
rs1196766	0.81[CHD][hapmap]
rs1196767	0.81[CHD][hapmap]
rs1196768	0.88[CHB][hapmap]
rs1196781	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs1196788	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs1196796	0.81[CHB][hapmap]
rs1196836	0.81[JPT][hapmap]
rs2374448	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs4964130	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4964348	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4964350	0.84[EUR][1000 genomes]
rs4964353	0.81[TSI][hapmap]
rs6419391	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66925241	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71441894	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs727888	0.82[CHB][hapmap]
rs7358662	0.83[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7959327	0.84[EUR][1000 genomes]
rs7970588	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7970719	0.83[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105683400-105688600	Weak transcription	NHEK	skin
2	chr12:105686600-105688800	Weak transcription	Stomach Mucosa	stomach
3	chr12:105686600-105689000	Enhancers	Fetal Intestine Small	intestine
4	chr12:105687000-105692200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:105687200-105688400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:105687200-105688600	Weak transcription	A549	lung
7	chr12:105687200-105688600	Weak transcription	Osteobl	bone
8	chr12:105687800-105688600	Weak transcription	Fetal Intestine Large	intestine

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