Variant report

Variant	rs4965237
Chromosome Location	chr15:99992366-99992367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99973224..99976448-chr15:99991050..99995157,5	MCF-7	breast:
2	chr15:99991338..99992840-chr15:100014340..100017006,2	MCF-7	breast:
3	chr15:99992216..99993719-chr15:99993741..99995434,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4965236	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56281609	0.82[ASN][1000 genomes]
rs7173091	0.82[ASN][1000 genomes]
rs73474883	0.82[ASN][1000 genomes]
rs73474894	0.82[ASN][1000 genomes]
rs74035732	0.82[ASN][1000 genomes]
rs74035739	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99979200-99995800	Enhancers	Fetal Thymus	thymus
2	chr15:99983400-99992600	Weak transcription	Fetal Lung	lung
3	chr15:99983400-99993600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:99983600-99992800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:99983600-99993200	Weak transcription	Psoas Muscle	Psoas
6	chr15:99984400-99992400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:99984400-99992600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:99985800-99994600	Enhancers	Fetal Heart	heart
9	chr15:99986800-99996600	Enhancers	Fetal Muscle Leg	muscle
10	chr15:99987200-99992800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:99987600-99994800	Weak transcription	Pancreas	Pancrea
12	chr15:99988000-99996600	Enhancers	Left Ventricle	heart
13	chr15:99988600-99992400	Weak transcription	HSMMtube	muscle
14	chr15:99988800-99993400	Weak transcription	Aorta	Aorta
15	chr15:99989000-99994200	Weak transcription	Hela-S3	cervix
16	chr15:99989000-99994600	Weak transcription	Fetal Kidney	kidney
17	chr15:99989000-99996000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:99989400-99993800	Enhancers	NH-A	brain
19	chr15:99989800-99992400	Enhancers	HMEC	breast
20	chr15:99990000-99992600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:99990000-99995800	Enhancers	Right Ventricle	heart
22	chr15:99990200-99992600	Weak transcription	Osteobl	bone
23	chr15:99990200-99992800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:99990200-99993000	Enhancers	Thymus	Thymus
25	chr15:99990200-99993600	Weak transcription	Brain Anterior Caudate	brain
26	chr15:99990600-99993000	Enhancers	Primary B cells from peripheral blood	blood
27	chr15:99990600-99993000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:99990600-99994600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:99990600-99995800	Enhancers	Esophagus	oesophagus
30	chr15:99990600-99996000	Enhancers	Stomach Mucosa	stomach
31	chr15:99990600-99996400	Enhancers	HUVEC	blood vessel
32	chr15:99990800-99992800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:99990800-99993000	Enhancers	Duodenum Mucosa	Duodenum
34	chr15:99990800-99993600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr15:99990800-99995200	Enhancers	Primary B cells from cord blood	blood
36	chr15:99990800-99995600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:99990800-99995800	Enhancers	Colonic Mucosa	Colon
38	chr15:99990800-99996000	Enhancers	Placenta	Placenta
39	chr15:99990800-99996400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:99990800-99996400	Enhancers	Lung	lung
41	chr15:99990800-99996600	Enhancers	Right Atrium	heart
42	chr15:99991000-99994200	Enhancers	Primary hematopoietic stem cells	blood
43	chr15:99991200-99993400	Enhancers	Spleen	Spleen
44	chr15:99991200-99994800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:99991200-99995800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr15:99991400-99992600	Bivalent Enhancer	HepG2	liver
47	chr15:99991400-99992800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:99991400-99993000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:99991400-99993400	Enhancers	Brain Hippocampus Middle	brain
50	chr15:99991400-99993400	Enhancers	Rectal Mucosa Donor 31	rectum

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