Variant report

Variant	rs56281609
Chromosome Location	chr15:99979061-99979062
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99975615..99977769-chr15:99978276..99979849,2	MCF-7	breast:
2	chr15:99974033..99977897-chr15:99978912..99982934,5	K562	blood:
3	chr15:99972394..99975109-chr15:99977541..99980166,2	MCF-7	breast:
4	chr15:99977572..99979807-chr15:99980072..99982815,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4965236	0.82[ASN][1000 genomes]
rs4965237	0.82[ASN][1000 genomes]
rs7173091	1.00[ASN][1000 genomes]
rs73474883	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73474894	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74035732	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74035739	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904547	chr15:99940221-99979159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv904548	chr15:99940221-99979418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv519800	chr15:99950772-99987109	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv904551	chr15:99954278-99979418	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv904552	chr15:99954278-99982447	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv904553	chr15:99954278-99983175	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv904554	chr15:99956954-99979418	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv904555	chr15:99956954-99981269	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv904556	chr15:99956954-99987109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv904557	chr15:99956954-99991506	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv519319	chr15:99972661-99991506	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv570728	chr15:99973369-99986764	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99971400-99979200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:99974200-99982000	Weak transcription	Gastric	stomach
3	chr15:99974200-99984000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:99974400-99982000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:99975000-99979200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:99975000-99982200	Enhancers	Fetal Heart	heart
7	chr15:99975200-99980000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr15:99976000-99981200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:99976000-99982000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:99976000-99982000	Weak transcription	Pancreas	Pancrea
11	chr15:99976000-99982200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:99976000-99982200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:99976200-99981400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:99976400-99981600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:99976400-99981600	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:99976400-99981600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:99976400-99982000	Weak transcription	HSMM	muscle
18	chr15:99976600-99981000	Weak transcription	Brain Germinal Matrix	brain
19	chr15:99976600-99981400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:99976600-99982000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:99976600-99984800	Enhancers	Fetal Muscle Leg	muscle
22	chr15:99976800-99981400	Weak transcription	Hela-S3	cervix
23	chr15:99976800-99982400	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:99977000-99979400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr15:99977200-99979200	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr15:99977200-99979200	Enhancers	Thymus	Thymus
27	chr15:99977200-99979400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:99977200-99980000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:99977400-99979400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:99977400-99980000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:99977600-99979400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr15:99977600-99979400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:99977600-99981200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:99977800-99979200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:99977800-99979400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:99977800-99979600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:99977800-99979600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr15:99977800-99979800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:99978000-99979200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr15:99978000-99979200	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr15:99978000-99979400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr15:99978000-99981400	Weak transcription	Colonic Mucosa	Colon
43	chr15:99978000-99981400	Weak transcription	Spleen	Spleen
44	chr15:99978200-99979200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:99978200-99979200	Enhancers	Fetal Lung	lung
46	chr15:99978200-99979400	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr15:99978200-99979400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr15:99978200-99981600	Weak transcription	Stomach Mucosa	stomach
49	chr15:99978400-99979200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr15:99978400-99979200	Flanking Active TSS	Dnd41	blood

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