Variant report

Variant	rs496549
Chromosome Location	chrX:73676286-73676287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10284046	0.88[CEU][hapmap]
rs1263181	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs479640	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs484079	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs485156	0.94[CEU][hapmap];0.81[YRI][hapmap]
rs4892385	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs4892386	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs4892514	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs500243	0.94[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]
rs520684	0.94[CEU][hapmap]
rs523649	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs538732	1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap]
rs552075	0.94[CEU][hapmap]
rs5937283	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs5937829	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs5937831	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs5937836	0.82[CEU][hapmap]
rs5937837	0.83[CEU][hapmap]
rs5937841	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs5937842	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs5937843	1.00[CHD][hapmap]
rs5981633	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73660200-73681600	Weak transcription	Brain Hippocampus Middle	brain
2	chrX:73672200-73676600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chrX:73672200-73691000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:73673600-73679200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chrX:73673800-73679000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:73675800-73685200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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