Variant report

Variant	rs5937842
Chromosome Location	chrX:73740502-73740503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10284046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11093451	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs1263181	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs34974916	1.00[CHB][hapmap]
rs473645	1.00[CHB][hapmap]
rs479640	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs484079	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs485156	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs486485	1.00[CHB][hapmap]
rs4892385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4892514	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs496549	0.83[CEU][hapmap];1.00[CHD][hapmap]
rs499282	1.00[CHB][hapmap]
rs500243	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs520684	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs523649	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs527480	1.00[CHB][hapmap]
rs538732	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs552075	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs557647	1.00[CHB][hapmap]
rs575348	1.00[CHB][hapmap]
rs5937283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs5937811	1.00[CHB][hapmap]
rs5937829	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs5937831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5937836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5937837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs5937841	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5937843	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.80[YRI][hapmap]
rs5937844	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs5981633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73713600-73744200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chrX:73732400-73755000	Weak transcription	Brain Substantia Nigra	brain
3	chrX:73732800-73745000	Weak transcription	HSMMtube	muscle
4	chrX:73734400-73740800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chrX:73734400-73752800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chrX:73734600-73741400	Weak transcription	Fetal Heart	heart
7	chrX:73734600-73742800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chrX:73734600-73746800	Weak transcription	Right Atrium	heart
9	chrX:73734600-73747800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chrX:73734800-73746200	Weak transcription	Fetal Intestine Small	intestine
11	chrX:73737000-73749000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chrX:73737200-73755400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chrX:73737400-73755400	Weak transcription	Brain Hippocampus Middle	brain
14	chrX:73739400-73755000	Weak transcription	Brain Cingulate Gyrus	brain
15	chrX:73739600-73755200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chrX:73740000-73740600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chrX:73740000-73741800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chrX:73740000-73748400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chrX:73740200-73740600	Weak transcription	NHDF-Ad	bronchial
20	chrX:73740400-73742800	Weak transcription	Fetal Lung	lung

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