Variant report

Variant	rs11093451
Chromosome Location	chrX:73656415-73656416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73641312..73645233-chrX:73652537..73656511,3	MCF-7	breast:
2	chrX:73644747..73647686-chrX:73655366..73657659,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10284046	0.94[CEU][hapmap]
rs12688747	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2094331	0.86[CHB][hapmap]
rs4110932	0.86[CHB][hapmap]
rs4892385	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs4892386	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs4892514	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs511721	0.86[CHB][hapmap]
rs563433	0.86[CHB][hapmap]
rs5937283	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs5937829	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs5937831	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs5937836	0.94[CEU][hapmap]
rs5937837	0.94[CEU][hapmap]
rs5937841	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs5937842	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs5981273	1.00[CHB][hapmap]
rs5981630	0.86[CHB][hapmap]
rs5981633	0.94[CEU][hapmap]
rs6647052	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73643000-73656800	Weak transcription	Brain Angular Gyrus	brain
2	chrX:73643600-73669200	Weak transcription	HSMM	muscle
3	chrX:73643800-73658200	Weak transcription	HSMMtube	muscle
4	chrX:73645000-73668800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chrX:73645800-73658400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chrX:73649200-73657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chrX:73652800-73662600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chrX:73654400-73662600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chrX:73656000-73658200	Weak transcription	Fetal Brain Male	brain

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