Variant report

Variant	rs563433
Chromosome Location	chrX:73675412-73675413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11093451	0.86[CHB][hapmap]
rs12688747	0.86[CHB][hapmap]
rs1634626	0.87[CHB][hapmap]
rs17312542	1.00[CEU][hapmap]
rs1926864	0.87[CHB][hapmap]
rs4892383	0.87[CHB][hapmap]
rs4892510	0.87[CHB][hapmap]
rs511721	1.00[CHB][hapmap]
rs517624	0.87[CHB][hapmap]
rs5981273	0.86[CHB][hapmap]
rs5981631	0.87[CHB][hapmap]
rs6607472	0.87[CHB][hapmap]
rs6607474	0.87[CHB][hapmap]
rs6647052	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73660200-73681600	Weak transcription	Brain Hippocampus Middle	brain
2	chrX:73672200-73676600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chrX:73672200-73691000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:73673600-73679200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chrX:73673800-73679000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:73675200-73675600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chrX:73675200-73675600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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