Variant report

Variant	rs5981631
Chromosome Location	chrX:73710432-73710433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1634626	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1926864	1.00[CHB][hapmap]
rs2094331	0.87[CHB][hapmap]
rs4110932	0.87[CHB][hapmap]
rs4892383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4892510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs511721	0.93[CEU][hapmap];0.87[CHB][hapmap]
rs517624	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs563433	0.87[CHB][hapmap]
rs5937843	1.00[CEU][hapmap]
rs5937844	0.86[CEU][hapmap]
rs5981630	0.87[CHB][hapmap]
rs6607472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6607474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647052	0.87[CHB][hapmap]
rs6647493	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73709000-73713200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chrX:73709800-73710800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chrX:73710200-73710800	Weak transcription	Stomach Mucosa	stomach
4	chrX:73710200-73711400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:73710400-73711600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chrX:73710400-73712000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chrX:73710400-73712400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links