Variant report

Variant	rs4110932
Chromosome Location	chrX:73714225-73714226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11093451	0.86[CHB][hapmap]
rs12688747	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs1634626	0.87[CHB][hapmap];0.80[CHD][hapmap]
rs1926864	0.87[CHB][hapmap]
rs2094331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs4892383	0.87[CHB][hapmap]
rs4892510	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs517624	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs5981273	0.86[CHB][hapmap]
rs5981630	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs5981631	0.87[CHB][hapmap]
rs6607472	0.87[CHB][hapmap]
rs6607474	0.87[CHB][hapmap]
rs6647493	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73710800-73714600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chrX:73711400-73714600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chrX:73711600-73715200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:73711800-73715000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chrX:73712000-73715000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chrX:73712200-73714800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chrX:73712200-73715200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chrX:73712400-73718200	Weak transcription	Liver	Liver
9	chrX:73713000-73714400	Enhancers	H1 Cell Line	embryonic stem cell
10	chrX:73713000-73714400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chrX:73713000-73714600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chrX:73713600-73744200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links