Variant report

Variant	rs2094331
Chromosome Location	chrX:73733796-73733797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11093451	0.86[CHB][hapmap]
rs12688747	0.86[CHB][hapmap]
rs1634626	0.87[CHB][hapmap]
rs1926864	0.87[CHB][hapmap]
rs4110932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs4892383	0.87[CHB][hapmap]
rs4892510	0.87[CHB][hapmap]
rs517624	0.87[CHB][hapmap]
rs5981273	0.86[CHB][hapmap]
rs5981630	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs5981631	0.87[CHB][hapmap]
rs6607472	0.87[CHB][hapmap]
rs6607474	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73713600-73744200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chrX:73725600-73734200	Weak transcription	Fetal Heart	heart
3	chrX:73726200-73733800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chrX:73731200-73734600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chrX:73731800-73735800	Enhancers	Liver	Liver
6	chrX:73732400-73755000	Weak transcription	Brain Substantia Nigra	brain
7	chrX:73732800-73745000	Weak transcription	HSMMtube	muscle
8	chrX:73733200-73734600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chrX:73733200-73734800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chrX:73733400-73734400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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