Variant report
Variant | rs4892510 |
---|---|
Chromosome Location | chrX:73694078-73694079 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1634626 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap] |
rs1926864 | 1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[MEX][hapmap] |
rs2094331 | 0.87[CHB][hapmap] |
rs4110932 | 0.87[CHB][hapmap];0.81[CHD][hapmap] |
rs4892383 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
rs511721 | 0.93[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap] |
rs517624 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap] |
rs563433 | 0.87[CHB][hapmap] |
rs5937843 | 1.00[CEU][hapmap];0.83[MEX][hapmap] |
rs5937844 | 0.85[CEU][hapmap] |
rs5981630 | 0.87[CHB][hapmap] |
rs5981631 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
rs6607472 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
rs6607474 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
rs6647052 | 0.87[CHB][hapmap] |
rs6647493 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3364045 | chrX:72896383-73699363 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 301 gene(s) | inside rSNPs | diseases |
2 | nsv916758 | chrX:73546406-74420929 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
3 | nsv532878 | chrX:73603325-74057587 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
4 | nsv521472 | chrX:73656415-73878101 | Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
No data |