Variant report

Variant	rs6647493
Chromosome Location	chrX:73713043-73713044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73712436..73713291-chrX:73769831..73770334,2	MCF-7	breast:
2	chrX:73712799..73713370-chrX:73770239..73770806,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1634626	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs1926864	0.88[CHB][hapmap];0.87[CHD][hapmap];0.82[MEX][hapmap]
rs4110932	0.81[CHD][hapmap]
rs4892383	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]
rs4892510	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs511721	0.92[CEU][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs517624	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs5937843	1.00[CEU][hapmap];0.83[MEX][hapmap]
rs5937844	0.85[CEU][hapmap]
rs5981631	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]
rs6607472	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]
rs6607474	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521472	chrX:73656415-73878101	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73709000-73713200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chrX:73710800-73714600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chrX:73711400-73714600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chrX:73711600-73715200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:73711800-73713200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chrX:73711800-73713800	Enhancers	Fetal Brain Female	brain
7	chrX:73711800-73714200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:73711800-73714200	Enhancers	H9 Cell Line	embryonic stem cell
9	chrX:73711800-73714200	Enhancers	Brain Germinal Matrix	brain
10	chrX:73711800-73715000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chrX:73712000-73715000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chrX:73712200-73714800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chrX:73712200-73715200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chrX:73712400-73714200	Enhancers	Brain Anterior Caudate	brain
15	chrX:73712400-73714200	Enhancers	Fetal Brain Male	brain
16	chrX:73712400-73718200	Weak transcription	Liver	Liver
17	chrX:73712600-73714000	Enhancers	Brain Cingulate Gyrus	brain
18	chrX:73712600-73714200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chrX:73712800-73713400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chrX:73712800-73714200	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chrX:73713000-73713400	Weak transcription	Brain Hippocampus Middle	brain
22	chrX:73713000-73714200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chrX:73713000-73714400	Enhancers	H1 Cell Line	embryonic stem cell
24	chrX:73713000-73714400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chrX:73713000-73714600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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