Variant report

Variant	rs497037
Chromosome Location	chr11:63732637-63732638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63731448..63734435-chr11:63923552..63925459,2	MCF-7	breast:
2	chr11:63731314..63732893-chr11:63933987..63936135,2	MCF-7	breast:
3	chr11:63729806..63732983-chr11:63741793..63744357,3	K562	blood:
4	chr11:63731406..63733226-chr11:63742203..63743940,2	MCF-7	breast:
5	chr11:63706203..63707851-chr11:63730134..63732864,2	K562	blood:
6	chr11:63730125..63732810-chr11:63733546..63735621,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256100	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000176340	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1187867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1211783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs161053	1.00[ASW][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap]
rs224174	1.00[ASW][hapmap]
rs2875719	0.85[AFR][1000 genomes]
rs3019784	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3132752	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320120	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320127	1.00[ASW][hapmap];0.87[YRI][hapmap]
rs320147	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320149	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs320153	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34036129	1.00[AMR][1000 genomes]
rs35352499	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4472946	1.00[ASW][hapmap]
rs4980510	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4980513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs565004	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs576548	0.85[LWK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60969355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591828	0.82[AFR][1000 genomes]
rs6591829	0.84[AFR][1000 genomes]
rs7116315	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126106	1.00[AMR][1000 genomes]
rs7126239	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130979	0.82[AFR][1000 genomes]
rs901492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63713400-63733800	Weak transcription	Right Atrium	heart
2	chr11:63724200-63733200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:63724200-63734800	Weak transcription	Ovary	ovary
4	chr11:63729200-63736600	Weak transcription	K562	blood
5	chr11:63729200-63738200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:63729600-63741600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:63730400-63733800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:63730800-63737000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:63732200-63732800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:63732400-63732800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:63732400-63733000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:63732600-63732800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:63732600-63733200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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