Variant report

Variant	rs901492
Chromosome Location	chr11:63707984-63707985
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63682242..63690244-chr11:63703955..63713214,18	K562	blood:
2	chr11:63531277..63535286-chr11:63705300..63707994,3	MCF-7	breast:
3	chr11:63655390..63658583-chr11:63705235..63708313,3	K562	blood:
4	chr11:63683456..63690158-chr11:63704393..63714412,17	K562	blood:
5	chr11:63601389..63603149-chr11:63706339..63708895,2	K562	blood:
6	chr11:63705424..63708366-chr11:63719461..63721078,2	MCF-7	breast:
7	chr11:63683018..63687693-chr11:63704987..63708969,9	MCF-7	breast:
8	chr11:63683295..63687930-chr11:63703819..63708534,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167771	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000256280	Chromatin interaction
ENSG00000188070	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1187867	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1211783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3019784	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3132752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320147	1.00[AMR][1000 genomes]
rs320148	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs320149	0.86[AFR][1000 genomes]
rs320153	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34036129	1.00[AMR][1000 genomes]
rs35352499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs497037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4980510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4980513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs565004	1.00[AMR][1000 genomes]
rs576548	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60969355	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591828	0.90[AFR][1000 genomes]
rs6591829	0.92[AFR][1000 genomes]
rs7112935	0.81[AFR][1000 genomes]
rs7116315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126239	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130472	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130979	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
9	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63705200-63708400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:63705400-63708000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:63705400-63708200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:63706400-63708800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:63706600-63708800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:63706800-63708000	Flanking Active TSS	Fetal Brain Female	brain
7	chr11:63707000-63708000	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr11:63707000-63708000	Flanking Active TSS	Dnd41	blood
9	chr11:63707000-63708000	Flanking Active TSS	Hela-S3	cervix
10	chr11:63707000-63708200	Flanking Active TSS	K562	blood
11	chr11:63707000-63708600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr11:63707200-63708600	Enhancers	Spleen	Spleen
13	chr11:63707200-63709000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:63707200-63724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:63707400-63708000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:63707400-63708000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:63707400-63708000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:63707400-63708000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:63707400-63708000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:63707400-63708000	Enhancers	Adipose Nuclei	Adipose
21	chr11:63707400-63708000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:63707400-63708000	Enhancers	Gastric	stomach
23	chr11:63707400-63708000	Enhancers	Left Ventricle	heart
24	chr11:63707400-63708000	Enhancers	Stomach Mucosa	stomach
25	chr11:63707400-63708200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:63707400-63708200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr11:63707400-63708200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr11:63707400-63708200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:63707400-63708200	Enhancers	Placenta	Placenta
30	chr11:63707400-63708400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:63707400-63708600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:63707400-63708600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:63707400-63708600	Enhancers	Fetal Heart	heart
34	chr11:63707400-63708800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr11:63707400-63708800	Enhancers	Brain Angular Gyrus	brain
36	chr11:63707400-63709000	Enhancers	Brain Substantia Nigra	brain
37	chr11:63707400-63709200	Enhancers	Primary B cells from peripheral blood	blood
38	chr11:63707400-63709600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr11:63707400-63710600	Weak transcription	Psoas Muscle	Psoas
40	chr11:63707400-63712400	Weak transcription	Esophagus	oesophagus
41	chr11:63707400-63712400	Weak transcription	Ovary	ovary
42	chr11:63707400-63712400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr11:63707400-63712600	Weak transcription	Aorta	Aorta
44	chr11:63707400-63713400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:63707400-63713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:63707400-63713800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:63707400-63719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:63707400-63721400	Weak transcription	Small Intestine	intestine
49	chr11:63707600-63708000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:63707600-63708000	Enhancers	Primary T cells from cord blood	blood

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