Variant report

Variant	rs4972484
Chromosome Location	chr2:173176278-173176279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10201605	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35427086	0.82[ASN][1000 genomes]
rs4496306	0.93[ASN][1000 genomes]
rs6720438	0.84[ASN][1000 genomes]
rs7578145	0.93[ASN][1000 genomes]
rs7594561	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173170400-173177200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:173170600-173178000	Weak transcription	Spleen	Spleen
3	chr2:173171000-173176400	Weak transcription	Stomach Mucosa	stomach
4	chr2:173173000-173176400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:173173000-173178000	Weak transcription	Lung	lung
6	chr2:173173000-173178200	Weak transcription	Fetal Thymus	thymus
7	chr2:173173000-173181600	Weak transcription	Right Atrium	heart
8	chr2:173173200-173176400	Weak transcription	Brain Substantia Nigra	brain
9	chr2:173173600-173176400	Weak transcription	Pancreas	Pancrea
10	chr2:173173600-173178000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:173173800-173176400	Weak transcription	Adipose Nuclei	Adipose
12	chr2:173173800-173176400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr2:173173800-173178000	Weak transcription	Right Ventricle	heart
14	chr2:173174000-173176400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:173175800-173177200	Enhancers	HUVEC	blood vessel
16	chr2:173176000-173176600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr2:173176000-173177200	Enhancers	Left Ventricle	heart
18	chr2:173176200-173178800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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