Variant report

Variant	rs4974479
Chromosome Location	chr3:134225715-134225716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134225453..134227625-chr3:134231530..134233647,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1138273	0.81[ASN][1000 genomes]
rs11706117	0.81[ASN][1000 genomes]
rs11919350	0.81[ASN][1000 genomes]
rs11927068	0.81[ASN][1000 genomes]
rs11928499	0.81[ASN][1000 genomes]
rs12490835	0.81[ASN][1000 genomes]
rs12636917	0.94[EUR][1000 genomes]
rs12637751	0.81[ASN][1000 genomes]
rs13059720	0.81[ASN][1000 genomes]
rs13065405	0.81[ASN][1000 genomes]
rs13081688	0.81[ASN][1000 genomes]
rs13087875	0.81[ASN][1000 genomes]
rs13096604	0.81[ASN][1000 genomes]
rs1880376	0.81[ASN][1000 genomes]
rs1880377	0.81[ASN][1000 genomes]
rs2177601	0.81[ASN][1000 genomes]
rs2370642	0.81[ASN][1000 genomes]
rs28409322	0.81[ASN][1000 genomes]
rs4974484	0.81[ASN][1000 genomes]
rs4974493	0.81[ASN][1000 genomes]
rs6763088	0.81[ASN][1000 genomes]
rs6763093	0.81[ASN][1000 genomes]
rs6766818	0.81[ASN][1000 genomes]
rs6768323	0.81[ASN][1000 genomes]
rs6799543	0.81[ASN][1000 genomes]
rs6804907	0.94[EUR][1000 genomes]
rs7427492	0.81[ASN][1000 genomes]
rs7429866	0.81[ASN][1000 genomes]
rs7432268	0.81[ASN][1000 genomes]
rs7619451	0.81[ASN][1000 genomes]
rs9820150	0.81[ASN][1000 genomes]
rs9820425	0.81[ASN][1000 genomes]
rs9829092	0.81[ASN][1000 genomes]
rs9832785	0.81[ASN][1000 genomes]
rs9850015	0.81[ASN][1000 genomes]
rs9871305	0.81[ASN][1000 genomes]
rs9968172	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134206400-134228000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:134206400-134234600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:134206400-134241200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:134206600-134226000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:134206600-134230200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:134206600-134232800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:134206600-134251600	Weak transcription	Colonic Mucosa	Colon
8	chr3:134206800-134236400	Weak transcription	Hela-S3	cervix
9	chr3:134207000-134228000	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:134207000-134235400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:134207000-134235800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:134207000-134235800	Weak transcription	A549	lung
13	chr3:134207000-134235800	Weak transcription	HepG2	liver
14	chr3:134207000-134241600	Weak transcription	Psoas Muscle	Psoas
15	chr3:134207200-134229400	Weak transcription	Small Intestine	intestine
16	chr3:134207400-134226000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:134209000-134232000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:134211400-134230400	Weak transcription	HUVEC	blood vessel
19	chr3:134213800-134246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:134214800-134226600	Weak transcription	NHDF-Ad	bronchial
21	chr3:134214800-134230000	Weak transcription	Osteobl	bone
22	chr3:134215600-134226000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:134215600-134228000	Weak transcription	Adipose Nuclei	Adipose
24	chr3:134215800-134226600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:134215800-134242200	Weak transcription	NHEK	skin
26	chr3:134216000-134226400	Weak transcription	Liver	Liver
27	chr3:134216000-134235800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:134216200-134230400	Weak transcription	HMEC	breast
29	chr3:134216200-134235800	Weak transcription	HSMMtube	muscle
30	chr3:134216200-134236400	Weak transcription	NH-A	brain
31	chr3:134216400-134226200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:134216400-134228400	Weak transcription	Fetal Brain Male	brain
33	chr3:134216600-134226000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:134216600-134229200	Weak transcription	Placenta	Placenta
35	chr3:134216800-134226000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:134217600-134226600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:134220200-134232400	Weak transcription	Brain Angular Gyrus	brain
38	chr3:134220400-134230400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:134220400-134232600	Weak transcription	Right Ventricle	heart
40	chr3:134222000-134245800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:134222400-134235800	Weak transcription	NHLF	lung
42	chr3:134222600-134226600	Weak transcription	HSMM	muscle
43	chr3:134223000-134229400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr3:134223200-134226400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:134223200-134227400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr3:134223200-134228000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:134223200-134229400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr3:134223200-134232800	Weak transcription	Brain Anterior Caudate	brain
49	chr3:134223200-134237000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:134223400-134229400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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