Variant report

Variant	rs4974490
Chromosome Location	chr3:134054668-134054669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134034717..134037202-chr3:134054056..134056170,2	MCF-7	breast:
2	chr3:134052272..134054008-chr3:134054064..134057061,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4974499	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134035000-134058800	Weak transcription	Liver	Liver
2	chr3:134041200-134056600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:134042000-134060800	Enhancers	Placenta	Placenta
4	chr3:134042800-134057000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:134045000-134056400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:134049200-134060800	Enhancers	Fetal Intestine Large	intestine
7	chr3:134049600-134054800	Enhancers	Lung	lung
8	chr3:134050600-134056200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:134050600-134057000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:134050600-134060400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:134050800-134054800	Enhancers	Colon Smooth Muscle	Colon
12	chr3:134050800-134061000	Weak transcription	Fetal Brain Female	brain
13	chr3:134051000-134055800	Enhancers	NHLF	lung
14	chr3:134051000-134056000	Enhancers	NHDF-Ad	bronchial
15	chr3:134051000-134056800	Enhancers	Osteobl	bone
16	chr3:134051200-134054800	Enhancers	HSMMtube	muscle
17	chr3:134051200-134056600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:134051400-134055200	Enhancers	Hela-S3	cervix
19	chr3:134051400-134056200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:134051400-134056200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr3:134051400-134058800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:134051400-134058800	Weak transcription	Fetal Kidney	kidney
23	chr3:134052000-134056000	Enhancers	Fetal Intestine Small	intestine
24	chr3:134052200-134058600	Enhancers	Esophagus	oesophagus
25	chr3:134052400-134057400	Enhancers	Right Ventricle	heart
26	chr3:134052600-134057600	Enhancers	Pancreas	Pancrea
27	chr3:134052800-134058600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:134052800-134058800	Enhancers	HepG2	liver
29	chr3:134053000-134054800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:134053000-134061200	Enhancers	Adipose Nuclei	Adipose
31	chr3:134053600-134055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:134053600-134057200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:134054000-134055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:134054000-134055200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:134054000-134055200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:134054000-134055200	Weak transcription	Right Atrium	heart
37	chr3:134054000-134055400	Weak transcription	NH-A	brain
38	chr3:134054000-134055600	Weak transcription	Gastric	stomach
39	chr3:134054000-134059600	Weak transcription	Colonic Mucosa	Colon
40	chr3:134054000-134064200	Weak transcription	Aorta	Aorta
41	chr3:134054200-134055200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:134054200-134055200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:134054200-134055200	Weak transcription	HMEC	breast
44	chr3:134054200-134055200	Weak transcription	HSMM	muscle
45	chr3:134054200-134055200	Weak transcription	NHEK	skin
46	chr3:134054200-134055400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:134054200-134055600	Weak transcription	Ovary	ovary
48	chr3:134054200-134056000	Weak transcription	Spleen	Spleen
49	chr3:134054200-134057200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:134054200-134058200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links