Variant report

Variant	rs4974499
Chromosome Location	chr3:134109567-134109568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16841619	0.93[AMR][1000 genomes]
rs1991441	0.93[AMR][1000 genomes]
rs4974490	1.00[AFR][1000 genomes]
rs58360777	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134098000-134111200	Weak transcription	Right Atrium	heart
2	chr3:134101400-134111600	Weak transcription	Pancreas	Pancrea
3	chr3:134102000-134111600	Weak transcription	Esophagus	oesophagus
4	chr3:134107800-134111200	Weak transcription	Right Ventricle	heart
5	chr3:134108200-134110800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134108200-134111200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:134108400-134111000	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:134108400-134111200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:134108400-134111200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:134108400-134111400	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:134108400-134111400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:134109400-134109600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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