Variant report

Variant	rs16841619
Chromosome Location	chr3:134114387-134114388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134100431..134103354-chr3:134114088..134116858,2	MCF-7	breast:
2	chr3:134102808..134105732-chr3:134114347..134116945,2	K562	blood:
3	chr3:134107152..134109398-chr3:134114324..134116029,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248377	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1991441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2133306	0.81[JPT][hapmap]
rs4974499	0.93[AMR][1000 genomes]
rs58360777	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7611308	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7624209	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134109600-134115400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:134110200-134116000	Enhancers	Fetal Muscle Leg	muscle
3	chr3:134111600-134115800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:134112000-134114400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:134112000-134115200	Weak transcription	Left Ventricle	heart
6	chr3:134112200-134115800	Enhancers	Adipose Nuclei	Adipose
7	chr3:134112400-134114400	Weak transcription	HSMMtube	muscle
8	chr3:134112600-134114400	Weak transcription	Osteobl	bone
9	chr3:134112600-134114600	Weak transcription	Fetal Heart	heart
10	chr3:134112600-134115800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:134113000-134115200	Weak transcription	Spleen	Spleen
12	chr3:134113000-134115600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:134113200-134114400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:134113400-134114400	Weak transcription	Right Atrium	heart
15	chr3:134113400-134115800	Weak transcription	Right Ventricle	heart
16	chr3:134113600-134115200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:134113600-134115800	Enhancers	Aorta	Aorta
18	chr3:134113800-134115000	Bivalent Enhancer	HepG2	liver
19	chr3:134113800-134116200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:134114000-134114600	Enhancers	Rectal Smooth Muscle	rectum
21	chr3:134114200-134114400	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links