Variant report
| Variant | rs2133306 |
|---|---|
| Chromosome Location | chr3:134119370-134119371 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:134119080..134120914-chr3:134199802..134202124,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000129055 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10222468 | 0.81[EUR][1000 genomes] |
| rs16841619 | 0.81[JPT][hapmap] |
| rs3846051 | 0.92[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs3913264 | 0.91[EUR][1000 genomes] |
| rs4974503 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4998531 | 0.87[EUR][1000 genomes] |
| rs55875738 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6771287 | 0.87[EUR][1000 genomes] |
| rs6783899 | 0.88[EUR][1000 genomes] |
| rs7611308 | 0.86[JPT][hapmap] |
| rs7624209 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9289470 | 0.84[CEU][hapmap] |
| rs9812855 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9829949 | 0.88[EUR][1000 genomes] |
| rs9842071 | 0.87[EUR][1000 genomes] |
| rs9849457 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes] |
| rs9879839 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3522171 | chr3:133889405-134156571 | Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | esv3522172 | chr3:133889405-134156571 | Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:134116000-134125000 | Weak transcription | Right Ventricle | heart |
