Variant report

Variant	rs9842071
Chromosome Location	chr3:134125096-134125097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10222468	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10433422	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2133306	0.87[EUR][1000 genomes]
rs3846051	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3913264	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974503	0.87[EUR][1000 genomes]
rs4998531	0.95[EUR][1000 genomes]
rs6771287	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783899	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9289470	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9829949	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9849457	0.86[EUR][1000 genomes]
rs9853685	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9866933	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9879839	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134122000-134125200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:134123400-134125200	Weak transcription	Esophagus	oesophagus
3	chr3:134123800-134125200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:134124000-134125200	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:134124000-134125200	Weak transcription	Pancreas	Pancrea
6	chr3:134124400-134125200	Enhancers	Brain Angular Gyrus	brain
7	chr3:134124400-134125200	Bivalent Enhancer	Fetal Stomach	stomach
8	chr3:134124400-134125200	Enhancers	Left Ventricle	heart
9	chr3:134124400-134125200	Bivalent Enhancer	Stomach Mucosa	stomach
10	chr3:134124400-134125400	Enhancers	Gastric	stomach
11	chr3:134124400-134125400	Enhancers	Lung	lung
12	chr3:134124400-134125600	Bivalent Enhancer	Fetal Lung	lung
13	chr3:134124400-134126600	Enhancers	Fetal Brain Male	brain
14	chr3:134124600-134125200	Active TSS	HSMM	muscle
15	chr3:134124600-134126200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr3:134124600-134126200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr3:134124600-134126200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr3:134124800-134125800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr3:134124800-134126000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:134125000-134125200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:134125000-134125200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
22	chr3:134125000-134125200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr3:134125000-134125200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:134125000-134125200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:134125000-134125200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
26	chr3:134125000-134125200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr3:134125000-134125200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
28	chr3:134125000-134125200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:134125000-134125200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:134125000-134125200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:134125000-134125200	Active TSS	Adipose Nuclei	Adipose
32	chr3:134125000-134125200	Bivalent Enhancer	Liver	Liver
33	chr3:134125000-134125200	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr3:134125000-134125200	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr3:134125000-134125200	Bivalent Enhancer	Colonic Mucosa	Colon
36	chr3:134125000-134125200	Enhancers	Colon Smooth Muscle	Colon
37	chr3:134125000-134125200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
38	chr3:134125000-134125200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr3:134125000-134125200	Enhancers	Fetal Brain Female	brain
40	chr3:134125000-134125200	Bivalent Enhancer	Fetal Intestine Large	intestine
41	chr3:134125000-134125200	Bivalent Enhancer	Fetal Intestine Small	intestine
42	chr3:134125000-134125200	Enhancers	Placenta	Placenta
43	chr3:134125000-134125200	Active TSS	Ovary	ovary
44	chr3:134125000-134125200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr3:134125000-134125200	Enhancers	Right Ventricle	heart
46	chr3:134125000-134125200	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr3:134125000-134125200	Bivalent Enhancer	HUVEC	blood vessel
48	chr3:134125000-134125200	Bivalent Enhancer	NH-A	brain
49	chr3:134125000-134125200	Flanking Active TSS	NHLF	lung
50	chr3:134125000-134125400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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