Variant report

Variant	rs55875738
Chromosome Location	chr3:134113235-134113236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134099072..134100750-chr3:134112662..134114251,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2133306	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974503	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9812855	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9849457	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134109600-134115400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:134110200-134116000	Enhancers	Fetal Muscle Leg	muscle
3	chr3:134111000-134113400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:134111200-134113400	Enhancers	Right Atrium	heart
5	chr3:134111600-134115800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:134112000-134113600	Weak transcription	Aorta	Aorta
7	chr3:134112000-134114200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:134112000-134114400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:134112000-134115200	Weak transcription	Left Ventricle	heart
10	chr3:134112200-134113800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:134112200-134114000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:134112200-134115800	Enhancers	Adipose Nuclei	Adipose
13	chr3:134112400-134113400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:134112400-134113800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:134112400-134114400	Weak transcription	HSMMtube	muscle
16	chr3:134112600-134113800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:134112600-134114400	Weak transcription	Osteobl	bone
18	chr3:134112600-134114600	Weak transcription	Fetal Heart	heart
19	chr3:134112600-134115800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:134112800-134113600	Enhancers	Fetal Muscle Trunk	muscle
21	chr3:134113000-134113400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:134113000-134113400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:134113000-134113400	Enhancers	Right Ventricle	heart
24	chr3:134113000-134113400	Enhancers	NHDF-Ad	bronchial
25	chr3:134113000-134115200	Weak transcription	Spleen	Spleen
26	chr3:134113000-134115600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:134113200-134113400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr3:134113200-134113400	Enhancers	Brain Substantia Nigra	brain
29	chr3:134113200-134113400	Enhancers	Colon Smooth Muscle	Colon
30	chr3:134113200-134114200	Enhancers	Brain Anterior Caudate	brain
31	chr3:134113200-134114400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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