Variant report

Variant	rs4975221
Chromosome Location	chr4:129213745-129213746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP1B-1	chr4:129209986-129214460	NONHSAT098262

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17337491	1.00[ASW][hapmap]
rs2062456	1.00[ASW][hapmap]
rs2133465	1.00[ASW][hapmap]
rs3733260	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs4305531	1.00[ASW][hapmap]
rs4834232	1.00[CHB][hapmap]
rs6534679	1.00[ASW][hapmap]
rs6840580	1.00[ASW][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129210000-129224400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:129210200-129216400	Weak transcription	Spleen	Spleen
3	chr4:129210200-129228600	Weak transcription	Left Ventricle	heart
4	chr4:129210200-129230400	Weak transcription	Ovary	ovary
5	chr4:129210200-129245800	Weak transcription	Esophagus	oesophagus
6	chr4:129210400-129215600	Weak transcription	Stomach Mucosa	stomach
7	chr4:129210400-129215800	Weak transcription	Adipose Nuclei	Adipose
8	chr4:129210400-129216400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:129210400-129217600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:129210400-129218000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:129210400-129218600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:129210400-129222400	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:129210400-129226200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:129210400-129227200	Weak transcription	Pancreas	Pancrea
15	chr4:129210400-129227800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:129210400-129231000	Weak transcription	HSMMtube	muscle
17	chr4:129210400-129231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:129210400-129235800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:129210400-129238000	Weak transcription	Thymus	Thymus
20	chr4:129210400-129240000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:129210400-129246400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:129210400-129247600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:129210600-129215600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:129210600-129218000	Weak transcription	Primary B cells from cord blood	blood
25	chr4:129210600-129222800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:129210600-129231000	Weak transcription	Osteobl	bone
27	chr4:129210600-129249800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:129210800-129214200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:129210800-129219400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:129210800-129221200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:129210800-129226400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:129210800-129227800	Weak transcription	Fetal Brain Male	brain
33	chr4:129210800-129230400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:129210800-129233000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr4:129211000-129215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:129211000-129218600	Weak transcription	Primary T cells from cord blood	blood
37	chr4:129211000-129226200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:129211000-129231000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:129211000-129244200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:129211000-129246400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:129211200-129214000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr4:129211200-129216400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:129211200-129216600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:129211200-129217200	Weak transcription	Placenta	Placenta
45	chr4:129211200-129220000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:129211200-129223400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:129211200-129231200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr4:129211200-129244000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:129211200-129248200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:129211200-129254400	Weak transcription	Brain Substantia Nigra	brain

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