Variant report

Variant	rs2062456
Chromosome Location	chr4:129401903-129401904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11733387	0.85[AMR][1000 genomes]
rs11937124	0.89[AMR][1000 genomes]
rs13108573	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1603886	0.81[AMR][1000 genomes]
rs1603887	0.81[AMR][1000 genomes]
rs17337491	1.00[ASW][hapmap]
rs2133465	1.00[ASW][hapmap]
rs4305531	1.00[ASW][hapmap]
rs4362840	1.00[ASW][hapmap];0.83[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes]
rs4975185	0.81[AMR][1000 genomes]
rs4975221	1.00[ASW][hapmap]
rs6534679	1.00[ASW][hapmap]
rs6534686	0.87[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs6534687	0.85[AMR][1000 genomes]
rs6821679	0.87[AMR][1000 genomes]
rs6840580	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6849290	0.87[CEU][hapmap];0.85[AMR][1000 genomes]
rs7441245	1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129376600-129406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:129376600-129435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:129388600-129406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:129390200-129402200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:129390200-129409000	Weak transcription	Fetal Heart	heart
6	chr4:129393000-129407000	Weak transcription	HMEC	breast
7	chr4:129393600-129403400	Weak transcription	HSMMtube	muscle
8	chr4:129394600-129402200	Weak transcription	Adipose Nuclei	Adipose
9	chr4:129396000-129410600	Weak transcription	Esophagus	oesophagus
10	chr4:129398600-129402200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:129400200-129406200	Strong transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links