Variant report

Variant	rs13108573
Chromosome Location	chr4:129395691-129395692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11733387	0.84[AMR][1000 genomes]
rs11937124	0.88[AMR][1000 genomes]
rs2062456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4362840	0.83[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes]
rs6534686	0.88[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes]
rs6534687	0.84[AMR][1000 genomes]
rs6821679	0.86[AMR][1000 genomes]
rs6840580	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6849290	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs7441245	0.83[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129376600-129406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:129376600-129435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:129377000-129397000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:129383000-129398800	Weak transcription	Pancreas	Pancrea
5	chr4:129386600-129398200	Weak transcription	Primary T cells from cord blood	blood
6	chr4:129388600-129406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:129389800-129397000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:129390200-129396000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:129390200-129396800	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:129390200-129402200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:129390200-129409000	Weak transcription	Fetal Heart	heart
12	chr4:129390400-129398800	Weak transcription	HUVEC	blood vessel
13	chr4:129390600-129395800	Weak transcription	Esophagus	oesophagus
14	chr4:129393000-129396600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:129393000-129407000	Weak transcription	HMEC	breast
16	chr4:129393200-129397200	Strong transcription	A549	lung
17	chr4:129393400-129398800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:129393600-129403400	Weak transcription	HSMMtube	muscle
19	chr4:129394600-129402200	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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