Variant report

Variant	rs7441245
Chromosome Location	chr4:129436625-129436626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129434134..129437730-chr4:129730733..129734391,6	K562	blood:
2	chr4:129429967..129432562-chr4:129432650..129436803,3	K562	blood:
3	chr4:129434600..129436972-chr4:129437723..129440318,3	MCF-7	breast:
4	chr4:129435297..129436932-chr4:129437203..129439219,2	K562	blood:
5	chr4:129432623..129434897-chr4:129435545..129438401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077684	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11733387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11937124	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13108573	0.84[AMR][1000 genomes]
rs13115644	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1603886	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1603887	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17337491	1.00[ASW][hapmap]
rs2062456	1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]
rs2133465	1.00[ASW][hapmap]
rs4305531	1.00[ASW][hapmap]
rs4362840	1.00[ASW][hapmap];0.91[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4975185	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6534679	1.00[ASW][hapmap]
rs6534686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534691	0.84[AMR][1000 genomes]
rs6821679	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6840580	1.00[ASW][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6849290	0.96[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129425800-129445600	Weak transcription	Gastric	stomach
2	chr4:129430600-129438600	Weak transcription	Fetal Heart	heart
3	chr4:129431200-129440800	Weak transcription	Left Ventricle	heart
4	chr4:129431600-129438800	Weak transcription	Pancreas	Pancrea
5	chr4:129433000-129438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:129433200-129437600	Weak transcription	Right Atrium	heart
7	chr4:129433400-129437600	Weak transcription	HSMM	muscle
8	chr4:129433400-129443200	Weak transcription	Lung	lung
9	chr4:129433600-129437200	Weak transcription	Fetal Lung	lung
10	chr4:129433600-129440000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:129434000-129437600	Weak transcription	Placenta	Placenta
12	chr4:129434400-129437200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:129434400-129437400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:129434400-129437400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:129434400-129437600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:129434400-129437800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:129434400-129438200	Weak transcription	HSMMtube	muscle
18	chr4:129434400-129438400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:129434400-129438600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:129434400-129438600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:129434400-129438800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:129434400-129438800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:129434600-129438400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:129434600-129438600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:129434600-129438800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:129435200-129437600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:129435200-129438400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:129435400-129437400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:129435400-129438800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:129435600-129437000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:129435600-129437000	Weak transcription	NHLF	lung
32	chr4:129435600-129437400	Weak transcription	Osteobl	bone
33	chr4:129435600-129437600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:129435600-129437600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:129435600-129437600	Weak transcription	HUVEC	blood vessel
36	chr4:129435600-129437800	Weak transcription	Hela-S3	cervix
37	chr4:129435600-129438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:129435600-129438400	Weak transcription	HepG2	liver
39	chr4:129435600-129438600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:129435800-129436800	Weak transcription	NHDF-Ad	bronchial
41	chr4:129436400-129437400	Weak transcription	A549	lung

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