Variant report

Variant	rs4976053
Chromosome Location	chr5:68192740-68192741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10076002	0.81[TSI][hapmap]
rs4280829	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4418057	0.80[ASN][1000 genomes]
rs6877035	0.84[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs6887308	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs6896689	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7737876	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4976053	PIK3R1	cis	cerebellum	SCAN
rs4976053	CCNB1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68179600-68195200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:68191000-68194600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:68191000-68194600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:68191200-68194400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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