Variant report

Variant	rs4979464
Chromosome Location	chr9:117602147-117602148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10982420	0.81[ASN][1000 genomes]
rs10982421	0.83[ASN][1000 genomes]
rs10982422	0.83[ASN][1000 genomes]
rs10982423	0.83[ASN][1000 genomes]
rs10982424	0.83[ASN][1000 genomes]
rs10982425	0.83[ASN][1000 genomes]
rs1853187	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2418318	0.83[ASN][1000 genomes]
rs56235203	0.83[ASN][1000 genomes]
rs6478111	0.81[ASN][1000 genomes]
rs722126	0.83[EUR][1000 genomes]
rs7872350	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117601600-117602200	ZNF genes & repeats	Pancreas	Pancrea
2	chr9:117601600-117602400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:117602000-117602200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:117602000-117602200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:117602000-117602200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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