Variant report

Variant	rs10982420
Chromosome Location	chr9:117601083-117601084
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10114224	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10115186	0.86[ASN][1000 genomes]
rs10116032	0.86[ASN][1000 genomes]
rs10122171	0.88[ASN][1000 genomes]
rs10491581	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1075074	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10982414	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10982417	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982424	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982427	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982431	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982433	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982434	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982436	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982438	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982439	0.80[EUR][1000 genomes]
rs11554257	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11560576	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12237626	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12237931	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12238227	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1590256	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16931895	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16931913	0.86[ASN][1000 genomes]
rs1853187	0.82[ASN][1000 genomes]
rs1885385	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093403	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2145930	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2145931	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2418318	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418319	0.84[ASN][1000 genomes]
rs2418320	0.86[ASN][1000 genomes]
rs2418321	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4262377	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4348576	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4979464	0.81[ASN][1000 genomes]
rs56136096	0.85[ASN][1000 genomes]
rs56235203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56339337	0.80[AMR][1000 genomes]
rs6478111	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022618	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7027093	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7027268	0.85[ASN][1000 genomes]
rs7043587	0.85[ASN][1000 genomes]
rs7468800	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7866387	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7872350	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117598800-117602000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:117598800-117602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:117600400-117601600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117601000-117601600	Weak transcription	Pancreas	Pancrea

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