Variant report

Variant	rs10982414
Chromosome Location	chr9:117574224-117574225
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10117997	0.82[ASN][1000 genomes]
rs10491581	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1075074	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10817677	0.82[ASN][1000 genomes]
rs10982412	0.92[CEU][hapmap]
rs10982415	0.82[ASN][1000 genomes]
rs10982417	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10982420	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10982421	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10982422	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10982423	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10982424	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10982425	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10982431	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982433	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982436	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982438	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11554257	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11560576	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12237626	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12237931	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12238227	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337233	0.82[ASN][1000 genomes]
rs12340243	0.82[ASN][1000 genomes]
rs1407306	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1419134	0.83[ASN][1000 genomes]
rs1590256	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16931895	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093403	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2145929	0.82[ASN][1000 genomes]
rs2145930	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2145931	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2418318	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2418321	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4262377	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56235203	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56339337	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6478111	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7029554	0.83[ASN][1000 genomes]
rs7032906	0.83[ASN][1000 genomes]
rs7468800	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7865494	0.82[ASN][1000 genomes]
rs7866221	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7866379	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7868351	0.97[ASN][1000 genomes]
rs7872350	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7873916	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117568800-117576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
3	chr9:117572800-117576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:117573200-117577600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:117573400-117574600	Enhancers	HMEC	breast
6	chr9:117573600-117574600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:117573600-117575400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr9:117573600-117575600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:117573600-117576200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:117574000-117574600	Enhancers	Rectal Smooth Muscle	rectum
11	chr9:117574000-117575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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