Variant report

Variant	rs12237626
Chromosome Location	chr9:117576300-117576301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10117997	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10491581	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1075074	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10817677	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982412	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10982413	0.84[EUR][1000 genomes]
rs10982414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10982415	0.84[ASN][1000 genomes]
rs10982416	0.82[EUR][1000 genomes]
rs10982417	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982420	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982421	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982422	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982423	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982424	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10982425	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10982431	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982433	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982436	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982438	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11554257	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11560576	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12237931	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12238227	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12337233	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12340243	0.84[ASN][1000 genomes]
rs1407306	0.83[ASN][1000 genomes]
rs1419134	0.83[ASN][1000 genomes]
rs1590256	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16931895	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17292046	0.81[EUR][1000 genomes]
rs2093403	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2145929	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs2145930	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2145931	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2418318	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2418321	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4262377	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56235203	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56339337	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6478111	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7029554	0.83[ASN][1000 genomes]
rs7032906	0.83[ASN][1000 genomes]
rs7468800	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7865494	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7866221	0.83[ASN][1000 genomes]
rs7866379	0.84[ASN][1000 genomes]
rs7868351	1.00[ASN][1000 genomes]
rs7872350	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7873916	0.85[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
2	chr9:117573200-117577600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117575600-117576600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:117575800-117576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:117576000-117576400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:117576200-117576400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr9:117576200-117576400	Enhancers	NHDF-Ad	bronchial
9	chr9:117576200-117576600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links