Variant report

Variant	rs2093403
Chromosome Location	chr9:117611913-117611914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117611299..117613789-chr9:117615464..117617211,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10114224	0.83[EUR][1000 genomes]
rs10115186	0.82[EUR][1000 genomes]
rs10116032	0.82[EUR][1000 genomes]
rs10122171	0.82[EUR][1000 genomes]
rs10491581	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1075074	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10982412	0.85[CEU][hapmap]
rs10982414	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982417	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10982420	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982421	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982422	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982423	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982424	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10982425	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10982427	0.83[EUR][1000 genomes]
rs10982431	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982433	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982434	0.83[EUR][1000 genomes]
rs10982436	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982439	0.84[EUR][1000 genomes]
rs11554257	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11560576	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12237626	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12237931	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12238227	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590256	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16931895	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16931913	0.81[EUR][1000 genomes]
rs1885385	0.80[EUR][1000 genomes]
rs2145929	0.86[CHD][hapmap];0.92[MEX][hapmap]
rs2145930	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2145931	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2418318	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2418319	0.82[EUR][1000 genomes]
rs2418320	0.82[EUR][1000 genomes]
rs2418321	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4262377	0.93[EUR][1000 genomes]
rs4348576	0.82[EUR][1000 genomes]
rs56136096	0.82[EUR][1000 genomes]
rs56235203	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56339337	0.81[ASN][1000 genomes]
rs6478111	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7022618	0.83[EUR][1000 genomes]
rs7027093	0.83[EUR][1000 genomes]
rs7027268	0.81[EUR][1000 genomes]
rs7043587	0.82[EUR][1000 genomes]
rs7468800	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7866387	0.84[EUR][1000 genomes]
rs7868351	0.86[ASN][1000 genomes]
rs7872350	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117610400-117614200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:117610800-117613200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:117611200-117614000	Enhancers	HSMM	muscle
5	chr9:117611200-117615000	Enhancers	NHDF-Ad	bronchial
6	chr9:117611400-117613200	Weak transcription	Fetal Stomach	stomach
7	chr9:117611600-117613000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:117611800-117613400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:117611800-117614800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117611800-117615800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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